PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC11268_p1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 329aa    MW: 36573.8 Da    PI: 7.6608
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC11268_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.88.1e-13261306655
                  HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  +++Er RR +i +++ +L+el+P+     +k  + a++L +Av+YIk+Lq
  RrC11268_p1 261 SIAERVRRTKISERMRKLQELVPNM----DKQTNTADMLDLAVDYIKDLQ 306
                  689*********************7....688*****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.262255305IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.76E-16258320IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.41E-12259308No hitNo description
Gene3DG3DSA:4.10.280.104.4E-14260317IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-12261311IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.9E-10261306IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048573Biological Processphotoperiodism, flowering
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MDSNTHNHLY DPNHIPPSGS SLLRFRSAPS SVLAAFVDDD NNKSGLGGSS DRLLSRFSGS  60
NGSNEFEAKS PVSLTNTSVS YAASLPPPPQ QQQPEPSGFL GLPPHYPRQS KGMMNTIGYG  120
SVRSLMDYVG EEEDQASPSS SNELRRHNSL SSRPPSSLGM LSQIPEIASE SSFQYSHWND  180
PASFIDNLSS SLKRETEDDD GKLFQNGESG NRMQLLSHHL SLPKSLSTAS DMVSVDKYMQ  240
LQDSVPCKIR AKRGCATHPR SIAERVRRTK ISERMRKLQE LVPNMDKQTN TADMLDLAVD  300
YIKDLQRQYK ILNENRANCK CMHKEKNLI
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00308DAPTransfer from AT2G42280Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2289811e-171AK228981.1 Arabidopsis thaliana mRNA for putative bHLH transcription factor, complete cds, clone: RAFL16-28-L05.
GenBankBT0153391e-171BT015339.1 Arabidopsis thaliana At2g42280 gene, complete cds.
GenBankBT0157121e-171BT015712.1 Arabidopsis thaliana At2g42280 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013744984.11e-176PREDICTED: transcription factor bHLH130-like
RefseqXP_009142051.11e-176PREDICTED: transcription factor bHLH130-like
SwissprotQ66GR31e-170BH130_ARATH; Transcription factor bHLH130
TrEMBLM4DK581e-176M4DK58_BRARP; Uncharacterized protein
STRINGBra016886.1-P1e-175(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM62932745
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42280.11e-145bHLH family protein